Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003646.1 Corchorus capsularis cultivar CVL-1 contig03654, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 670

Length: 1117
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32


Found at i:676 original size:16 final size:15

Alignment explanation


    Indices: 655--685  Score: 53
    Period size: 16  Copynumber: 2.0  Consensus size: 15

        645 CAACCGGCTT

                            
        655 GAGCCGAGCCGCGTTC
          1 GAGCCGAGCCG-GTTC

                           
        671 GAGCCGAGCCGGTTC
          1 GAGCCGAGCCGGTTC

        686 AAAAATAATT


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  15    4  0.27
  16   11  0.73

ACGTcount: A:0.13, C:0.35, G:0.39, T:0.13


Consensus pattern (15 bp):   
GAGCCGAGCCGGTTC
Done.