Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003648.1 Corchorus capsularis cultivar CVL-1 contig03656, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 694

Length: 1158
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.29


Found at i:356 original size:28 final size:28

Alignment explanation


    Indices: 324--396  Score: 110
    Period size: 28  Copynumber: 2.6  Consensus size: 28

        314 GTAGATTAAG

                        *               
        324 AATGACCAAAATACCCCCTAAATGCCAA
          1 AATGACCAAAATGCCCCCTAAATGCCAA

                                *   **  
        352 AATGACCAAAATGCCCCCTAGATGTGAA
          1 AATGACCAAAATGCCCCCTAAATGCCAA

                             
        380 AATGACCAAAATGCCCC
          1 AATGACCAAAATGCCCC

        397 TGGATGCTAA


Statistics
Matches: 41,  Mismatches: 4, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  28   41  1.00

ACGTcount: A:0.42, C:0.30, G:0.12, T:0.15


Consensus pattern (28 bp):   
AATGACCAAAATGCCCCCTAAATGCCAA
Done.