Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003663.1 Corchorus capsularis cultivar CVL-1 contig03671, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 658

Length: 1098
ACGTcount: A:0.46, C:0.10, G:0.10, T:0.34


Found at i:560 original size:25 final size:25

Alignment explanation


    Indices: 511--561  Score: 68
    Period size: 25  Copynumber: 2.0  Consensus size: 25

        501 TAGTAGAATT

                        *            
        511 AATTGTAAAAGTTTATTTCTAAAAA
          1 AATTGTAAAAGTATATTTCTAAAAA

                                       
        536 AATTGTAAAAGAATATATTT-TAAAAA
          1 AATTGTAAAAG--TATATTTCTAAAAA

        562 TTCTAATATG


Statistics
Matches: 23,  Mismatches: 1, Indels: 3
        0.85            0.04        0.11

Matches are distributed among these distances:
  25   11  0.48
  26    6  0.26
  27    6  0.26

ACGTcount: A:0.53, C:0.02, G:0.08, T:0.37


Consensus pattern (25 bp):   
AATTGTAAAAGTATATTTCTAAAAA

Found at i:773 original size:25 final size:25

Alignment explanation


    Indices: 719--773  Score: 101
    Period size: 25  Copynumber: 2.2  Consensus size: 25

        709 AAAATTTTCT

                *                    
        719 AATACATCTAAGTTTTTTTAATTAA
          1 AATAGATCTAAGTTTTTTTAATTAA

                                     
        744 AATAGATCTAAGTTTTTTTAATTAA
          1 AATAGATCTAAGTTTTTTTAATTAA

                 
        769 AATAG
          1 AATAG

        774 TAAAATGGTA


Statistics
Matches: 29,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  25   29  1.00

ACGTcount: A:0.42, C:0.05, G:0.07, T:0.45


Consensus pattern (25 bp):   
AATAGATCTAAGTTTTTTTAATTAA
Done.