Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003665.1 Corchorus capsularis cultivar CVL-1 contig03673, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 659

Length: 1099
ACGTcount: A:0.34, C:0.17, G:0.10, T:0.40


Found at i:654 original size:87 final size:82

Alignment explanation


    Indices: 556--769  Score: 275
    Period size: 75  Copynumber: 2.6  Consensus size: 82

        546 TTCCTTTTCT

                  *                                                          
        556 ATATCTTCTAAATCTCCCACAATTTGGCAAGATTTAGAAAATATTCTCGTTATTAACTCAATCTT
          1 ATATCTCCTAAATCTCCCACAATTTGGCAAGATTTAGAAAATATTCTC--TATT-A-TCAA-CTT

                                   
        621 TATAATT-TATTTATTTCTTAAA
         61 TATAATTAT-TTTATTTCTTAAA

                                     *                                     **
        643 ATATCTCCTAAATCTCCCACAATTTTGCAAGATTTAG-AAA-A-----TATTATCAACTTTATTG
          1 ATATCTCCTAAATCTCCCACAATTTGGCAAGATTTAGAAAATATTCTCTATTATCAACTTTATAA

                             
        701 TTATTTTATTTCTTAAA
         66 TTATTTTATTTCTTAAA

                                                                 
        718 ATATCTCCTAAATCTCCCACAATTTGGCAAGATTTAGAAAATATTCTC-ATTA
          1 ATATCTCCTAAATCTCCCACAATTTGGCAAGATTTAGAAAATATTCTCTATTA

        770 CTATTTTAAC


Statistics
Matches: 114,  Mismatches: 5, Indels: 22
        0.81            0.04        0.16

Matches are distributed among these distances:
  75   57  0.50
  76    8  0.07
  77    2  0.02
  78    4  0.04
  81    4  0.04
  85    1  0.01
  86    3  0.03
  87   35  0.31

ACGTcount: A:0.35, C:0.17, G:0.06, T:0.42


Consensus pattern (82 bp):   
ATATCTCCTAAATCTCCCACAATTTGGCAAGATTTAGAAAATATTCTCTATTATCAACTTTATAA
TTATTTTATTTCTTAAA
Done.