Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003666.1 Corchorus capsularis cultivar CVL-1 contig03674, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 602

Length: 1004
ACGTcount: A:0.37, C:0.16, G:0.17, T:0.30


Found at i:762 original size:27 final size:27

Alignment explanation


    Indices: 685--764  Score: 115
    Period size: 27  Copynumber: 3.0  Consensus size: 27

        675 AGGTGAACCT

                     *            *  * 
        685 AAAAATGACTAAAATGCCCCTGAGTAC
          1 AAAAATGACCAAAATGCCCCTGGGTGC

                                       
        712 AAAAATGACCAAAATGCCCCTGGGTGC
          1 AAAAATGACCAAAATGCCCCTGGGTGC

                           *   *      
        739 AAAAATGACCAAAATACCCTTGGGTG
          1 AAAAATGACCAAAATGCCCCTGGGTG

        765 ACCCTAATGC


Statistics
Matches: 48,  Mismatches: 5, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  27   48  1.00

ACGTcount: A:0.41, C:0.23, G:0.19, T:0.17


Consensus pattern (27 bp):   
AAAAATGACCAAAATGCCCCTGGGTGC
Done.