Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003669.1 Corchorus capsularis cultivar CVL-1 contig03677, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 616

Length: 1027
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29


Found at i:29 original size:13 final size:13

Alignment explanation


    Indices: 4--38  Score: 52
    Period size: 13  Copynumber: 2.7  Consensus size: 13

          1 TCC

                         
          4 TAAAGCAAATTAA
          1 TAAAGCAAATTAA

               *    *    
         17 TAAGGCAATTTAA
          1 TAAAGCAAATTAA

                     
         30 TAAAGCAAA
          1 TAAAGCAAA

         39 CAATAATTAT


Statistics
Matches: 18,  Mismatches: 4, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  13   18  1.00

ACGTcount: A:0.57, C:0.09, G:0.11, T:0.23


Consensus pattern (13 bp):   
TAAAGCAAATTAA
Done.