Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003672.1 Corchorus capsularis cultivar CVL-1 contig03680, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 765

Length: 1276
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28


Found at i:362 original size:20 final size:21

Alignment explanation


    Indices: 337--391  Score: 87
    Period size: 20  Copynumber: 2.7  Consensus size: 21

        327 CGACTAGCGC

                                 
        337 TGGGCGCCCATGTGCTATG-T
          1 TGGGCGCCCATGTGCTATGCT

                                 
        357 TGGGCGCCCATGTGCTATGCT
          1 TGGGCGCCCATGTGCTATGCT

                           
        378 T-GGCGCCCCATGTG
          1 TGGGCG-CCCATGTG

        392 GTTTGCCTCG


Statistics
Matches: 33,  Mismatches: 0, Indels: 3
        0.92            0.00        0.08

Matches are distributed among these distances:
  20   23  0.70
  21   10  0.30

ACGTcount: A:0.09, C:0.29, G:0.35, T:0.27


Consensus pattern (21 bp):   
TGGGCGCCCATGTGCTATGCT

Done.