Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003675.1 Corchorus capsularis cultivar CVL-1 contig03683, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7993
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31


Found at i:3884 original size:4 final size:4

Alignment explanation


    Indices: 3875--3906  Score: 64
    Period size: 4  Copynumber: 8.0  Consensus size: 4

       3865 TTTAACTCTT

                                                   
       3875 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
          1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA

       3907 CTTTTAATCT


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   28  1.00

ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75


Consensus pattern (4 bp):   
TTTA

Done.