Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003685.1 Corchorus capsularis cultivar CVL-1 contig03693, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 655

Length: 1093
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35


Found at i:1034 original size:37 final size:38

Alignment explanation


    Indices: 956--1034  Score: 115
    Period size: 38  Copynumber: 2.1  Consensus size: 38

        946 ATAATTACCC

                                     *          * 
        956 ATTTAATTTTGCCTTTTGTCTTAGTTTCCAATCGTTGT
          1 ATTTAATTTTGCCTTTTGTCTTAGTCTCCAATCGTTCT

                        *         *               
        994 ATTTAATTTTGCTTTTTGTCTTTGTCTCCAA-CGTTCT
          1 ATTTAATTTTGCCTTTTGTCTTAGTCTCCAATCGTTCT

                
       1031 ATTT
          1 ATTT

       1035 GGGCTTAGAT


Statistics
Matches: 37,  Mismatches: 4, Indels: 1
        0.88            0.10        0.02

Matches are distributed among these distances:
  37    9  0.24
  38   28  0.76

ACGTcount: A:0.15, C:0.16, G:0.11, T:0.57


Consensus pattern (38 bp):   
ATTTAATTTTGCCTTTTGTCTTAGTCTCCAATCGTTCT
Done.