Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003687.1 Corchorus capsularis cultivar CVL-1 contig03695, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 735

Length: 1226
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41


Found at i:789 original size:26 final size:28

Alignment explanation


    Indices: 756--831  Score: 102
    Period size: 27  Copynumber: 2.8  Consensus size: 28

        746 ATTAGAGTCG

                *   *                   
        756 CCCAAGGGTATTTTGGTCATTTTTG-CA
          1 CCCAGGGGCATTTTGGTCATTTTTGACA

                                        
        783 CCCAGGGGCATTTTGGTCA-TTTTGACA
          1 CCCAGGGGCATTTTGGTCATTTTTGACA

             *            *       
        810 CTCAGGGGCATTTTAGTCATTT
          1 CCCAGGGGCATTTTGGTCATTT

        832 ATTTTTCTAA


Statistics
Matches: 43,  Mismatches: 4, Indels: 3
        0.86            0.08        0.06

Matches are distributed among these distances:
  26    5  0.12
  27   36  0.84
  28    2  0.05

ACGTcount: A:0.18, C:0.20, G:0.24, T:0.38


Consensus pattern (28 bp):   
CCCAGGGGCATTTTGGTCATTTTTGACA
Done.