Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003688.1 Corchorus capsularis cultivar CVL-1 contig03696, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 658

Length: 1097
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30


Found at i:338 original size:27 final size:27

Alignment explanation


    Indices: 291--358  Score: 77
    Period size: 27  Copynumber: 2.5  Consensus size: 27

        281 ATCCTAAGGA

                       *                
        291 ACTAACTTTGACTGGGAAACTGT-TCTG
          1 ACTAACTTTGAATGGGAAACTGTCT-TG

                *                       
        318 ACTAGCTTTGAAT-GGAGAACTGTCTTG
          1 ACTAACTTTGAATGGGA-AACTGTCTTG

                    *     
        345 ACTAACTTGGAATG
          1 ACTAACTTTGAATG

        359 AGAGTCTGAC


Statistics
Matches: 34,  Mismatches: 4, Indels: 5
        0.79            0.09        0.12

Matches are distributed among these distances:
  26    3  0.09
  27   30  0.88
  28    1  0.03

ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32


Consensus pattern (27 bp):   
ACTAACTTTGAATGGGAAACTGTCTTG
Done.