Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003694.1 Corchorus capsularis cultivar CVL-1 contig03702, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 726

Length: 1211
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.36


Found at i:1191 original size:16 final size:16

Alignment explanation


    Indices: 1170--1204  Score: 70
    Period size: 16  Copynumber: 2.2  Consensus size: 16

       1160 ATCTGAAATA

                            
       1170 CTTCAGAGCTTTTCTG
          1 CTTCAGAGCTTTTCTG

                            
       1186 CTTCAGAGCTTTTCTG
          1 CTTCAGAGCTTTTCTG

               
       1202 CTT
          1 CTT

       1205 TCTGAAT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   19  1.00

ACGTcount: A:0.11, C:0.26, G:0.17, T:0.46


Consensus pattern (16 bp):   
CTTCAGAGCTTTTCTG
Done.