Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003707.1 Corchorus capsularis cultivar CVL-1 contig03715, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 782

Length: 1304
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37


Found at i:774 original size:18 final size:19

Alignment explanation


    Indices: 748--787  Score: 55
    Period size: 18  Copynumber: 2.2  Consensus size: 19

        738 ATAATTATTC

                               
        748 ATTAAAAAGAATTA-TAAT
          1 ATTAAAAAGAATTAGTAAT

                *     *        
        766 ATTATAAAGATTTAGTAAT
          1 ATTAAAAAGAATTAGTAAT

               
        785 ATT
          1 ATT

        788 TTTCAACAAA


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  18   12  0.63
  19    7  0.37

ACGTcount: A:0.53, C:0.00, G:0.07, T:0.40


Consensus pattern (19 bp):   
ATTAAAAAGAATTAGTAAT

Done.