Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003710.1 Corchorus capsularis cultivar CVL-1 contig03718, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 849

Length: 1415
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29


Found at i:279 original size:23 final size:23

Alignment explanation


    Indices: 253--329  Score: 106
    Period size: 22  Copynumber: 3.4  Consensus size: 23

        243 ATAATTAAGG

                                    
        253 AGGTTACCAAAATTTTGATAAG-A
          1 AGGTTACCAAAATTTT-ATAAGTA

                           *      *
        276 AGGTTACCAAAATTTCAT-AGTG
          1 AGGTTACCAAAATTTTATAAGTA

                                   
        298 AGGTTACCAAAATTTTATAAGTA
          1 AGGTTACCAAAATTTTATAAGTA

                      
        321 A-GTTACCAA
          1 AGGTTACCAA

        330 TCAATGAATT


Statistics
Matches: 48,  Mismatches: 4, Indels: 5
        0.84            0.07        0.09

Matches are distributed among these distances:
  21    2  0.04
  22   27  0.56
  23   19  0.40

ACGTcount: A:0.42, C:0.12, G:0.16, T:0.31


Consensus pattern (23 bp):   
AGGTTACCAAAATTTTATAAGTA

Done.