Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000372.1 Corchorus capsularis cultivar CVL-1 contig00372, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 670

Length: 1117
ACGTcount: A:0.26, C:0.12, G:0.27, T:0.35


Found at i:183 original size:15 final size:15

Alignment explanation


    Indices: 160--189  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

        150 ATCGGTTGAA

                *          
        160 ATATTGTGTATCGTG
          1 ATATCGTGTATCGTG

                           
        175 ATATCGTGTATCGTG
          1 ATATCGTGTATCGTG

        190 GCAGCCTGAT


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.20, C:0.10, G:0.27, T:0.43


Consensus pattern (15 bp):   
ATATCGTGTATCGTG
Done.