Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003725.1 Corchorus capsularis cultivar CVL-1 contig03733, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4995
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.30


Found at i:1493 original size:12 final size:12

Alignment explanation


    Indices: 1477--1508  Score: 55
    Period size: 12  Copynumber: 2.7  Consensus size: 12

       1467 GCCGCACAAC

                        
       1477 ACCGGCCACATG
          1 ACCGGCCACATG

            *           
       1489 TCCGGCCACATG
          1 ACCGGCCACATG

                    
       1501 ACCGGCCA
          1 ACCGGCCA

       1509 TCGCATGCGA


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  12   18  1.00

ACGTcount: A:0.22, C:0.44, G:0.25, T:0.09


Consensus pattern (12 bp):   
ACCGGCCACATG

Found at i:2644 original size:9 final size:9

Alignment explanation


    Indices: 2626--2660  Score: 52
    Period size: 9  Copynumber: 3.8  Consensus size: 9

       2616 AGTTATATCG

                 *   
       2626 AAAAATTAA
          1 AAAAAATAA

                     
       2635 AAAAAATAA
          1 AAAAAATAA

                     
       2644 AAAAAATAA
          1 AAAAAATAA

                    
       2653 AGAAAAAT
          1 A-AAAAAT

       2661 TTCGACCAGA


Statistics
Matches: 24,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
   9   18  0.75
  10    6  0.25

ACGTcount: A:0.83, C:0.00, G:0.03, T:0.14


Consensus pattern (9 bp):   
AAAAAATAA
Done.