Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003734.1 Corchorus capsularis cultivar CVL-1 contig03742, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 610

Length: 1017
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.32


Found at i:13 original size:6 final size:6

Alignment explanation


    Indices: 3--60  Score: 116
    Period size: 6  Copynumber: 9.7  Consensus size: 6

          1 CC

                                                                   
          3 GAGGCT GAGGCT GAGGCT GAGGCT GAGGCT GAGGCT GAGGCT GAGGCT
          1 GAGGCT GAGGCT GAGGCT GAGGCT GAGGCT GAGGCT GAGGCT GAGGCT

                       
         51 GAGGCT GAGG
          1 GAGGCT GAGG

         61 TGGTGTAAGT


Statistics
Matches: 52,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   52  1.00

ACGTcount: A:0.17, C:0.16, G:0.52, T:0.16


Consensus pattern (6 bp):   
GAGGCT

Done.