Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003736.1 Corchorus capsularis cultivar CVL-1 contig03744, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1787
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.35


Found at i:58 original size:12 final size:12

Alignment explanation


    Indices: 41--67  Score: 54
    Period size: 12  Copynumber: 2.2  Consensus size: 12

         31 TAGTAGCCTC

                        
         41 AAAAAAAAAATA
          1 AAAAAAAAAATA

                        
         53 AAAAAAAAAATA
          1 AAAAAAAAAATA

               
         65 AAA
          1 AAA

         68 TAAAGGGCGT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   15  1.00

ACGTcount: A:0.93, C:0.00, G:0.00, T:0.07


Consensus pattern (12 bp):   
AAAAAAAAAATA
Done.