Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003742.1 Corchorus capsularis cultivar CVL-1 contig03750, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 612

Length: 1021
ACGTcount: A:0.42, C:0.10, G:0.15, T:0.33


Found at i:113 original size:8 final size:9

Alignment explanation


    Indices: 80--115  Score: 56
    Period size: 9  Copynumber: 4.1  Consensus size: 9

         70 ATAATTTTCT

                     
         80 TATC-AAAA
          1 TATCAAAAA

                     
         88 TATCAAAAA
          1 TATCAAAAA

                     
         97 TATCAAAAA
          1 TATCAAAAA

            *        
        106 CATCAAAAA
          1 TATCAAAAA

             
        115 T
          1 T

        116 TACTCCTGGC


Statistics
Matches: 25,  Mismatches: 2, Indels: 1
        0.89            0.07        0.04

Matches are distributed among these distances:
   8    4  0.16
   9   21  0.84

ACGTcount: A:0.64, C:0.14, G:0.00, T:0.22


Consensus pattern (9 bp):   
TATCAAAAA
Done.