Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003750.1 Corchorus capsularis cultivar CVL-1 contig03758, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 675

Length: 1126
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26


Found at i:1027 original size:112 final size:111

Alignment explanation


    Indices: 762--1126  Score: 335
    Period size: 112  Copynumber: 3.2  Consensus size: 111

        752 AAAATTGAAT

                         *  *                                *           *   
        762 ATAGCGGCGTCTTGACAC-AAGACGCCGCTAAATGGCGGCGTCTAAAGTACAAAACGCCGCTATA
          1 ATAGCGGCGTCTTCACCCTAA-ACGCCGCTAAATGGCGGCGTCT-AAGTTCAAAACGCCGCCATA

            *                    *   *** *                   
        826 GTTAATTTTTTCGGAGAAACGTAAATTGAGTAAGAATGAAACCTAAAAA
         64 TTTAA-TTTTTCGGAGAAACGCAAAAAAACTAAGAATGAAACCTAAAAA

                                               *                             
        875 ATAGCGGCGTCTTCACCCTAAACGCCGCTAAATGGTGGCGTCTAAGGTTCAAAACGCCGCCATAT
          1 ATAGCGGCGTCTTCACCCTAAACGCCGCTAAATGGCGGCGTCTAA-GTTCAAAACGCCGCCATAT

                        *    *                *    *    *   
        940 TTAATTTTTCGGGGAAATGCAAAAAAACTCAA-ATTGAAGCCT-GAAA
         65 TTAATTTTTCGGAGAAACGCAAAAAAACT-AAGAATGAAACCTAAAAA

                         *   *                                     *         
        986 ATAGCGGCGTC-TGAGGTCCTAAACGCCGCTAAATGGCGGCGTCTGAA-TTACAATACGCCGCCA
          1 ATAGCGGCGTCTTCA--CCCTAAACGCCGCTAAATGGCGGCGTCT-AAGTT-CAAAACGCCGCCA

                           **     * *   **  *   *               
       1049 TATTTAATTTTTTCCAAAGAAATGTAAATTAAGTAAAAATGAAACCTAAAAA
         62 TATTTAA-TTTTT-CGGAGAAACGCAAAAAAACTAAGAATGAAACCTAAAAA

                         **           
       1101 ATAGCGGCGTCTTGTCCCTAAACGCC
          1 ATAGCGGCGTCTTCACCCTAAACGCC


Statistics
Matches: 208,  Mismatches: 32, Indels: 23
        0.79            0.12        0.09

Matches are distributed among these distances:
 110    2  0.01
 111   16  0.08
 112   73  0.35
 113   68  0.33
 114   33  0.16
 115   14  0.07
 116    2  0.01

ACGTcount: A:0.35, C:0.21, G:0.21, T:0.24


Consensus pattern (111 bp):   
ATAGCGGCGTCTTCACCCTAAACGCCGCTAAATGGCGGCGTCTAAGTTCAAAACGCCGCCATATT
TAATTTTTCGGAGAAACGCAAAAAAACTAAGAATGAAACCTAAAAA
Done.