Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003754.1 Corchorus capsularis cultivar CVL-1 contig03762, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2656
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.29


Found at i:2581 original size:54 final size:54

Alignment explanation


    Indices: 2451--2610  Score: 288
    Period size: 54  Copynumber: 3.0  Consensus size: 54

       2441 TGGCCCAATT

                   *                                              
       2451 TCCTTAAAAAGTACACTATTGCATTTGTGTTTAC-AAAATACCAATAAT-AAAA
          1 TCCTTAATAAGTACACTATTGCATTTGTGTTTACAAAAATACCAATAATAAAAA

                                                                  
       2503 TCCTTAATAAGTACACTATTGCATTTGTGTTTACAAAAATACCAATAATAAAAA
          1 TCCTTAATAAGTACACTATTGCATTTGTGTTTACAAAAATACCAATAATAAAAA

                                                   *              
       2557 TCCTTAATAAGTACACTATTGCATTTGTGTTTACAAAAACACCAATAATAAAAA
          1 TCCTTAATAAGTACACTATTGCATTTGTGTTTACAAAAATACCAATAATAAAAA

       2611 AGAGAAGAAG


Statistics
Matches: 104,  Mismatches: 2, Indels: 2
        0.96            0.02        0.02

Matches are distributed among these distances:
  52   33  0.32
  53   14  0.13
  54   57  0.55

ACGTcount: A:0.44, C:0.16, G:0.07, T:0.33


Consensus pattern (54 bp):   
TCCTTAATAAGTACACTATTGCATTTGTGTTTACAAAAATACCAATAATAAAAA
Done.