Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003764.1 Corchorus capsularis cultivar CVL-1 contig03772, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 612

Length: 1021
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35


Found at i:516 original size:1 final size:1

Alignment explanation


    Indices: 510--556  Score: 67
    Period size: 1  Copynumber: 47.0  Consensus size: 1

        500 GCCTCAAGCA

                      * **                                 
        510 TTTTTTTTTTCTAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
          1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

        557 CACTTCTCTG


Statistics
Matches: 41,  Mismatches: 5, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
   1   41  1.00

ACGTcount: A:0.02, C:0.02, G:0.02, T:0.94


Consensus pattern (1 bp):   
T

Done.