Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003767.1 Corchorus capsularis cultivar CVL-1 contig03775, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 610

Length: 1018
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33


Found at i:1002 original size:34 final size:33

Alignment explanation


    Indices: 950--1018  Score: 95
    Period size: 34  Copynumber: 2.1  Consensus size: 33

        940 TACACTGAGT

                                *            
        950 CTCCCCACTAGGACGGCTCAGCCACGGCGGAGC
          1 CTCCCCACTAGGACGGCTCAACCACGGCGGAGC

                                    *          
        983 CTCCCCAACTAGGGA-GGCTCAACTACGGCGGAGC
          1 CTCCCC-ACTA-GGACGGCTCAACCACGGCGGAGC

              
       1017 CT
          1 CT


Statistics
Matches: 32,  Mismatches: 2, Indels: 3
        0.86            0.05        0.08

Matches are distributed among these distances:
  33    6  0.19
  34   23  0.72
  35    3  0.09

ACGTcount: A:0.20, C:0.39, G:0.29, T:0.12


Consensus pattern (33 bp):   
CTCCCCACTAGGACGGCTCAACCACGGCGGAGC
Done.