Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000378.1 Corchorus capsularis cultivar CVL-1 contig00378, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2007
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.38


Found at i:970 original size:20 final size:20

Alignment explanation


    Indices: 947--984  Score: 67
    Period size: 20  Copynumber: 1.9  Consensus size: 20

        937 CTGGGTTAAT

                                
        947 CCGGGTTTCAACGGGTCACA
          1 CCGGGTTTCAACGGGTCACA

                *             
        967 CCGGTTTTCAACGGGTCA
          1 CCGGGTTTCAACGGGTCA

        985 ATTGCTCAAA


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  20   17  1.00

ACGTcount: A:0.18, C:0.29, G:0.29, T:0.24


Consensus pattern (20 bp):   
CCGGGTTTCAACGGGTCACA
Done.