Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003781.1 Corchorus capsularis cultivar CVL-1 contig03789, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 912

Length: 1520
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.33


Found at i:518 original size:63 final size:64

Alignment explanation


    Indices: 447--575  Score: 251
    Period size: 64  Copynumber: 2.0  Consensus size: 64

        437 CATTCCTCTT

                                                                            
        447 TATTTTACTTTACATTAAGAA-TTTTTTTTCCTAATTTACCTAATAAGGTAGAGAAATAATATA
          1 TATTTTACTTTACATTAAGAATTTTTTTTTCCTAATTTACCTAATAAGGTAGAGAAATAATATA

                                                                            
        510 TATTTTACTTTACATTAAGAATTTTTTTTTCCTAATTTACCTAATAAGGTAGAGAAATAATATA
          1 TATTTTACTTTACATTAAGAATTTTTTTTTCCTAATTTACCTAATAAGGTAGAGAAATAATATA

              
        574 TA
          1 TA

        576 GGTATTTAGT


Statistics
Matches: 65,  Mismatches: 0, Indels: 1
        0.98            0.00        0.02

Matches are distributed among these distances:
  63   21  0.32
  64   44  0.68

ACGTcount: A:0.38, C:0.09, G:0.08, T:0.45


Consensus pattern (64 bp):   
TATTTTACTTTACATTAAGAATTTTTTTTTCCTAATTTACCTAATAAGGTAGAGAAATAATATA

Done.