Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003783.1 Corchorus capsularis cultivar CVL-1 contig03791, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 704

Length: 1174
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.29


Found at i:837 original size:30 final size:30

Alignment explanation


    Indices: 797--855  Score: 84
    Period size: 30  Copynumber: 2.0  Consensus size: 30

        787 TGACTTCAAG

                                           
        797 TCCATAATAAGTCCTT-GGCACATCATTCCT
          1 TCCATAATAAG-CCTTGGGCACATCATTCCT

                 *             *         
        827 TCCATGATAAGCCTTGGGCGCATCATTCC
          1 TCCATAATAAGCCTTGGGCACATCATTCC

        856 CTCCCCCTTG


Statistics
Matches: 26,  Mismatches: 2, Indels: 2
        0.87            0.07        0.07

Matches are distributed among these distances:
  29    4  0.15
  30   22  0.85

ACGTcount: A:0.24, C:0.31, G:0.15, T:0.31


Consensus pattern (30 bp):   
TCCATAATAAGCCTTGGGCACATCATTCCT
Done.