Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003792.1 Corchorus capsularis cultivar CVL-1 contig03800, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 664

Length: 1108
ACGTcount: A:0.37, C:0.19, G:0.14, T:0.30


Found at i:168 original size:19 final size:18

Alignment explanation


    Indices: 135--170  Score: 54
    Period size: 19  Copynumber: 1.9  Consensus size: 18

        125 TTGAAATAAT

                              
        135 TCTTCAATGATCTTCAAA
          1 TCTTCAATGATCTTCAAA

                     *        
        153 TCTTCAAATTATCTTCAA
          1 TCTTC-AATGATCTTCAA

        171 GAAATCTTCA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    5  0.31
  19   11  0.69

ACGTcount: A:0.33, C:0.22, G:0.03, T:0.42


Consensus pattern (18 bp):   
TCTTCAATGATCTTCAAA

Found at i:893 original size:12 final size:13

Alignment explanation


    Indices: 871--905  Score: 54
    Period size: 12  Copynumber: 2.8  Consensus size: 13

        861 AGTGAAAGTT

                         
        871 GAAAGTGAAAAAA
          1 GAAAGTGAAAAAA

                *        
        884 -AAATTGAAAAAA
          1 GAAAGTGAAAAAA

                      
        896 GAAAGTGAAA
          1 GAAAGTGAAA

        906 GGAAAGGCGA


Statistics
Matches: 19,  Mismatches: 2, Indels: 2
        0.83            0.09        0.09

Matches are distributed among these distances:
  12   11  0.58
  13    8  0.42

ACGTcount: A:0.69, C:0.00, G:0.20, T:0.11


Consensus pattern (13 bp):   
GAAAGTGAAAAAA
Done.