Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003794.1 Corchorus capsularis cultivar CVL-1 contig03802, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1691
ACGTcount: A:0.34, C:0.23, G:0.13, T:0.30


Found at i:996 original size:30 final size:31

Alignment explanation


    Indices: 962--1021  Score: 86
    Period size: 31  Copynumber: 2.0  Consensus size: 31

        952 ATGTGGCACG

                        *                  
        962 CCATGTGGAC-ACAAAATGCCACATGTCATA
          1 CCATGTGGACAAAAAAATGCCACATGTCATA

                   *               *      
        992 CCATGTGTACAAAAAAATGCCACGTGTCAT
          1 CCATGTGGACAAAAAAATGCCACATGTCAT

       1022 GGGACCCACA


Statistics
Matches: 26,  Mismatches: 3, Indels: 1
        0.87            0.10        0.03

Matches are distributed among these distances:
  30    9  0.35
  31   17  0.65

ACGTcount: A:0.37, C:0.25, G:0.17, T:0.22


Consensus pattern (31 bp):   
CCATGTGGACAAAAAAATGCCACATGTCATA

Found at i:1480 original size:16 final size:16

Alignment explanation


    Indices: 1455--1502  Score: 78
    Period size: 16  Copynumber: 3.0  Consensus size: 16

       1445 GTAATTTATT

                            
       1455 ATTTTCGAAAGCCCCC
          1 ATTTTCGAAAGCCCCC

                 *        * 
       1471 ATTTTTGAAAGCCCTC
          1 ATTTTCGAAAGCCCCC

                            
       1487 ATTTTCGAAAGCCCCC
          1 ATTTTCGAAAGCCCCC

       1503 TTAACCGAAA


Statistics
Matches: 28,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  16   28  1.00

ACGTcount: A:0.25, C:0.33, G:0.12, T:0.29


Consensus pattern (16 bp):   
ATTTTCGAAAGCCCCC
Done.