Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000380.1 Corchorus capsularis cultivar CVL-1 contig00380, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2069
ACGTcount: A:0.35, C:0.13, G:0.14, T:0.39


Found at i:1385 original size:25 final size:25

Alignment explanation


    Indices: 1335--1387  Score: 61
    Period size: 26  Copynumber: 2.1  Consensus size: 25

       1325 ATAGCATATT

                         *           
       1335 AATTAATTTGTAATATAATATGAAA
          1 AATTAATTTGTAAAATAATATGAAA

                     *       *    *   
       1360 AATTAATTTTTATAAATCATATAAAA
          1 AATTAATTTGTA-AAATAATATGAAA

              
       1386 AA
          1 AA

       1388 GAAACAAATC


Statistics
Matches: 23,  Mismatches: 4, Indels: 1
        0.82            0.14        0.04

Matches are distributed among these distances:
  25   11  0.48
  26   12  0.52

ACGTcount: A:0.55, C:0.02, G:0.04, T:0.40


Consensus pattern (25 bp):   
AATTAATTTGTAAAATAATATGAAA
Done.