Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003805.1 Corchorus capsularis cultivar CVL-1 contig03813, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1693
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.32


Found at i:832 original size:15 final size:16

Alignment explanation


    Indices: 800--840  Score: 50
    Period size: 16  Copynumber: 2.6  Consensus size: 16

        790 AAAGTTTCAA

                      *     
        800 TTTCAAAAATCAA-TT
          1 TTTCAAAAATAAATTT

                             
        815 TTTCAAAAA-AAATCTT
          1 TTTCAAAAATAAAT-TT

                      
        831 TTTCAAAAAT
          1 TTTCAAAAAT

        841 TGGGGAAAAT


Statistics
Matches: 22,  Mismatches: 1, Indels: 4
        0.81            0.04        0.15

Matches are distributed among these distances:
  14    2  0.09
  15    9  0.41
  16   11  0.50

ACGTcount: A:0.49, C:0.12, G:0.00, T:0.39


Consensus pattern (16 bp):   
TTTCAAAAATAAATTT
Done.