Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000381.1 Corchorus capsularis cultivar CVL-1 contig00381, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 610

Length: 1018
ACGTcount: A:0.49, C:0.10, G:0.11, T:0.30


Found at i:886 original size:107 final size:106

Alignment explanation


    Indices: 760--966  Score: 285
    Period size: 108  Copynumber: 1.9  Consensus size: 106

        750 TTGCAAGAAC

                            *                             *          *       
        760 TTATCTTTTATGACGAAAAAAAGAAAAAAACAGCATG-AA-AATAAGGAATCATTTCCATGACTT
          1 TTATCTTTTATGAC--CAAAAA-AAAAAAACAGCATGAAATAATAAAGAATCATTTCAATGACTT

                                     **                 
        823 CAAGAGAAAGATAAGAAATATACATGTGGAGATTAAACCTGTAT
         63 CAAGAGAAAGATAAGAAATATACATACGGAGATTAAACCTGTAT

                                          *                                  
        867 TTATCTTTTAT-AGCCAAAAAAAAAAAACATCATGAAAAATAATAAAGAATCATTTCAATGACTT
          1 TTATCTTTTATGA-CCAAAAAAAAAAAACAGCATG--AAATAATAAAGAATCATTTCAATGACTT

                                                
        931 CAAGAGAAAGATAAGAAATATACATACGGAGATTAA
         63 CAAGAGAAAGATAAGAAATATACATACGGAGATTAA

        967 TCCTAAAAAA


Statistics
Matches: 89,  Mismatches: 6, Indels: 9
        0.86            0.06        0.09

Matches are distributed among these distances:
 104   13  0.15
 105    5  0.06
 106    1  0.01
 107   14  0.16
 108   56  0.63

ACGTcount: A:0.50, C:0.11, G:0.14, T:0.25


Consensus pattern (106 bp):   
TTATCTTTTATGACCAAAAAAAAAAAACAGCATGAAATAATAAAGAATCATTTCAATGACTTCAA
GAGAAAGATAAGAAATATACATACGGAGATTAAACCTGTAT
Done.