Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003813.1 Corchorus capsularis cultivar CVL-1 contig03821, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 914

Length: 1524
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:996 original size:2 final size:2

Alignment explanation


    Indices: 989--1025  Score: 74
    Period size: 2  Copynumber: 18.5  Consensus size: 2

        979 AAATAATGTT

                                                                   
        989 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

       1026 CAAGTTGGCA


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   35  1.00

ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51


Consensus pattern (2 bp):   
TA

Done.