Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003817.1 Corchorus capsularis cultivar CVL-1 contig03825, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 906

Length: 1511
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.37


Found at i:1164 original size:38 final size:38

Alignment explanation


    Indices: 1113--1190  Score: 140
    Period size: 38  Copynumber: 2.1  Consensus size: 38

       1103 TAAAATTACC

                                                  
       1113 AAAAATTCAAAGTATTAAGTAAGAATGTAAGATTGTTG
          1 AAAAATTCAAAGTATTAAGTAAGAATGTAAGATTGTTG

                                                   
       1151 AAAAATGT-AAAGTATTAAGTAAGAATGTAAGATTGTTG
          1 AAAAAT-TCAAAGTATTAAGTAAGAATGTAAGATTGTTG

              
       1189 AA
          1 AA

       1191 TTTGTTGAAA


Statistics
Matches: 39,  Mismatches: 0, Indels: 2
        0.95            0.00        0.05

Matches are distributed among these distances:
  38   38  0.97
  39    1  0.03

ACGTcount: A:0.49, C:0.01, G:0.19, T:0.31


Consensus pattern (38 bp):   
AAAAATTCAAAGTATTAAGTAAGAATGTAAGATTGTTG
Done.