Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003822.1 Corchorus capsularis cultivar CVL-1 contig03830, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 607

Length: 1013
ACGTcount: A:0.30, C:0.14, G:0.18, T:0.39


Found at i:570 original size:15 final size:16

Alignment explanation


    Indices: 550--583  Score: 52
    Period size: 16  Copynumber: 2.2  Consensus size: 16

        540 GATTGTTGTC

                         *  
        550 TTAGTTA-ATTTACTT
          1 TTAGTTAGATTTAATT

                            
        565 TTAGTTAGATTTAATT
          1 TTAGTTAGATTTAATT

               
        581 TTA
          1 TTA

        584 ATTATTCTTT


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  15    7  0.41
  16   10  0.59

ACGTcount: A:0.29, C:0.03, G:0.09, T:0.59


Consensus pattern (16 bp):   
TTAGTTAGATTTAATT

Done.