Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01003828.1 Corchorus capsularis cultivar CVL-1 contig03836, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5597

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
540--612
33
2.2
33
80
0
83
28
15
20
35
1.93
566--622
16
3.5
16
70
13
53
26
8
24
40
1.84
1243--1322
41
1.9
42
90
7
128
40
8
11
40
1.72
1889--1918
13
2.3
13
94
0
51
23
10
40
26
1.86
3241--3357
57
2.1
57
100
0
234
35
13
12
37
1.83
4016--4059
22
2.0
22
82
8
54
40
11
2
45
1.53
4074--4290
22
9.8
22
69
8
109
36
13
11
38
1.81
4344--4403
22
2.7
22
82
5
77
38
11
13
36
1.81
4368--4663
22
13.7
23
67
16
104
35
14
9
40
1.78
4535--4638
44
2.4
42
81
9
136
38
12
8
40
1.74
4740--4882
44
3.2
44
72
12
132
33
11
8
46
1.69
4766--4886
22
5.5
22
73
2
100
33
11
9
45
1.72
5020--5143
22
5.6
22
71
14
94
37
19
8
35
1.81
5180--5362
22
8.2
22
75
9
138
38
17
8
35
1.80
5235--5363
44
3.0
43
83
4
152
37
14
9
38
1.79
5531--5579
19
2.5
19
83
9
55
65
0
6
28
1.16

Tables:   1

The End!