Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000383.1 Corchorus capsularis cultivar CVL-1 contig00383, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3495
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.32


Found at i:2790 original size:19 final size:18

Alignment explanation


    Indices: 2762--2805  Score: 52
    Period size: 19  Copynumber: 2.4  Consensus size: 18

       2752 AAAAAAATCT

                      *       
       2762 ATTATTTAATTTAAAATA
          1 ATTATTTAATATAAAATA

                          * *  
       2780 ATTATTATAATATATATTA
          1 ATTATT-TAATATAAAATA

                   
       2799 ATTATTT
          1 ATTATTT

       2806 TTGTTATTAT


Statistics
Matches: 22,  Mismatches: 3, Indels: 2
        0.81            0.11        0.07

Matches are distributed among these distances:
  18    7  0.32
  19   15  0.68

ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55


Consensus pattern (18 bp):   
ATTATTTAATATAAAATA
Done.