Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003835.1 Corchorus capsularis cultivar CVL-1 contig03843, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 725

Length: 1209
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.38


Found at i:401 original size:16 final size:16

Alignment explanation


    Indices: 376--406  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

        366 TCTACATATT

                            
        376 ATAAAGATTTAGTAAA
          1 ATAAAGATTTAGTAAA

                 *         
        392 ATAAATATTTAGTAA
          1 ATAAAGATTTAGTAA

        407 TATTTTTCAA


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  16   14  1.00

ACGTcount: A:0.55, C:0.00, G:0.10, T:0.35


Consensus pattern (16 bp):   
ATAAAGATTTAGTAAA
Done.