Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003838.1 Corchorus capsularis cultivar CVL-1 contig03846, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 633

Length: 1055
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.37


Found at i:109 original size:21 final size:20

Alignment explanation


    Indices: 66--110  Score: 54
    Period size: 20  Copynumber: 2.2  Consensus size: 20

         56 CAAAATAGAT

                           **   
         66 TAAAAACTACCAATTTTAAA
          1 TAAAAACTACCAATTAGAAA

                       *         
         86 TAAAAACTACCCATTAGAAGA
          1 TAAAAACTACCAATTAGAA-A

                
        107 TAAA
          1 TAAA

        111 TATAATATTT


Statistics
Matches: 21,  Mismatches: 3, Indels: 1
        0.84            0.12        0.04

Matches are distributed among these distances:
  20   16  0.76
  21    5  0.24

ACGTcount: A:0.56, C:0.16, G:0.04, T:0.24


Consensus pattern (20 bp):   
TAAAAACTACCAATTAGAAA
Done.