Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000384.1 Corchorus capsularis cultivar CVL-1 contig00384, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 823

Length: 1372
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38


Found at i:1337 original size:38 final size:38

Alignment explanation


    Indices: 1286--1363  Score: 131
    Period size: 38  Copynumber: 2.1  Consensus size: 38

       1276 TTTCAACAAA

                                                   
       1286 TTCAACAATCTTACATTCTTACTTAATACTTT-ACATTT
          1 TTCAACAATCTTACATTCTTACTTAATACTTTGA-ATTT

                                 *                
       1324 TTCAACAATCTTACATTCTTATTTAATACTTTGAATTT
          1 TTCAACAATCTTACATTCTTACTTAATACTTTGAATTT

              
       1362 TT
          1 TT

       1364 TGGTAATTT


Statistics
Matches: 38,  Mismatches: 1, Indels: 2
        0.93            0.02        0.05

Matches are distributed among these distances:
  38   37  0.97
  39    1  0.03

ACGTcount: A:0.31, C:0.18, G:0.01, T:0.50


Consensus pattern (38 bp):   
TTCAACAATCTTACATTCTTACTTAATACTTTGAATTT
Done.