Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01003840.1 Corchorus capsularis cultivar CVL-1 contig03848, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8837

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4737--4787
4
12.8
4
100
0
102
50
23
0
25
1.49
5651--5714
26
2.4
28
85
15
82
42
7
1
48
1.41
6310--6364
30
1.9
30
85
10
80
43
1
5
49
1.36
6619--6656
19
2.0
20
89
5
60
28
5
0
65
1.14
6818--7035
66
3.3
67
79
10
232
33
10
17
38
1.83
6818--7040
22
10.0
22
78
9
170
34
9
17
38
1.83
7058--7175
22
5.4
20
73
13
76
38
8
18
33
1.81
7062--7161
44
2.3
43
79
8
103
38
10
19
33
1.85
7297--7423
22
5.8
22
72
9
89
40
11
15
32
1.82
7547--8026
22
21.7
22
70
12
191
38
9
14
37
1.79
7547--7781
66
3.5
66
77
9
230
38
9
14
37
1.78
7854--7897
23
1.9
23
85
0
61
27
13
20
38
1.90

Tables:   1

The End!