Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003843.1 Corchorus capsularis cultivar CVL-1 contig03851, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3648
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.33


Found at i:2863 original size:18 final size:18

Alignment explanation


    Indices: 2842--2876  Score: 52
    Period size: 18  Copynumber: 1.9  Consensus size: 18

       2832 TCGATATTTA

                   *  *       
       2842 TCGATATCTCGATAAATC
          1 TCGATATATCCATAAATC

                             
       2860 TCGATATATCCATAAAT
          1 TCGATATATCCATAAAT

       2877 ATCCATATTA


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   15  1.00

ACGTcount: A:0.37, C:0.20, G:0.09, T:0.34


Consensus pattern (18 bp):   
TCGATATATCCATAAATC

Found at i:3225 original size:3 final size:3

Alignment explanation


    Indices: 3213--3242  Score: 53
    Period size: 3  Copynumber: 10.3  Consensus size: 3

       3203 GCTCACGGAA

                                                     
       3213 GAT G-T GAT GAT GAT GAT GAT GAT GAT GAT G
          1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G

       3243 GGGGAAATGA


Statistics
Matches: 26,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
   2    2  0.08
   3   24  0.92

ACGTcount: A:0.30, C:0.00, G:0.37, T:0.33


Consensus pattern (3 bp):   
GAT

Done.