Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01003846.1 Corchorus capsularis cultivar CVL-1 contig03854, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7682

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
249--451
94
2.2
94
85
1
273
30
13
16
39
1.88
321--599
148
1.9
148
88
4
429
30
13
15
40
1.86
680--1022
94
3.6
94
84
0
418
30
13
16
39
1.87
863--1476
226
2.7
223
85
3
793
33
14
13
38
1.86
2225--2315
45
2.0
45
86
0
128
27
12
20
39
1.88
2270--2627
72
5.1
72
75
10
321
31
13
18
37
1.89
2598--2687
45
2.0
45
91
4
146
31
17
17
33
1.94
2645--2910
74
3.6
73
78
5
232
33
15
15
34
1.90
2696--2906
74
2.9
73
82
2
246
34
15
15
34
1.90
4647--4856
96
2.2
95
81
8
248
33
15
14
36
1.88
4918--5170
94
2.7
94
82
3
298
32
13
15
39
1.86
5411--5856
94
4.7
93
84
6
535
31
15
14
38
1.88
5411--5856
187
2.4
187
85
6
591
31
15
14
38
1.88
4573--6177
509
3.2
497
78
7
1745
32
15
13
38
1.87
5920--6177
94
2.7
94
89
2
367
32
17
12
37
1.87
5609--6827
320
3.8
320
84
3
1655
32
14
14
37
1.87
6248--6493
94
2.6
94
79
8
259
33
13
14
39
1.85
6560--6819
94
2.7
94
89
1
385
30
15
16
38
1.89
6683--6966
149
1.9
147
84
4
383
31
12
14
41
1.84
6832--7053
94
2.4
94
83
6
281
33
12
13
40
1.81
6586--7074
243
2.0
246
85
4
675
32
12
14
40
1.84
7505--7556
25
2.1
24
89
3
77
42
19
0
38
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7573--7640
26
2.6
26
90
0
109
54
10
1
33
1.43
7573--7676
52
2.0
51
81
9
122
53
9
1
34
1.45

Tables:   1

The End!