Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003847.1 Corchorus capsularis cultivar CVL-1 contig03855, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 852

Length: 1420
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30


Found at i:496 original size:33 final size:33

Alignment explanation


    Indices: 425--532  Score: 130
    Period size: 33  Copynumber: 3.3  Consensus size: 33

        415 AAAGGATCGT

                              *    *         *
        425 GTGGCCGGTTGTGGCCGGGCATGGCCGA-GTCGT
          1 GTGGCCGGTTGTGGCCGGACATGTCC-ATGTCGC

            *           *     *              
        458 TTGGCCGGTTGTAGCCGGCCATGTCCATGTCGC
          1 GTGGCCGGTTGTGGCCGGACATGTCCATGTCGC

                                              
        491 GTGGCCGG-TGATGGCCGGACATGTCCATGTCGC
          1 GTGGCCGGTTG-TGGCCGGACATGTCCATGTCGC

                     
        524 GTGGCCGGT
          1 GTGGCCGGT

        533 CTTGTCTCCG


Statistics
Matches: 64,  Mismatches: 8, Indels: 5
        0.83            0.10        0.06

Matches are distributed among these distances:
  32    3  0.05
  33   61  0.95

ACGTcount: A:0.08, C:0.27, G:0.42, T:0.23


Consensus pattern (33 bp):   
GTGGCCGGTTGTGGCCGGACATGTCCATGTCGC
Done.