Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003849.1 Corchorus capsularis cultivar CVL-1 contig03857, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 640

Length: 1067
ACGTcount: A:0.37, C:0.09, G:0.13, T:0.40


Found at i:122 original size:38 final size:38

Alignment explanation


    Indices: 71--148  Score: 131
    Period size: 38  Copynumber: 2.1  Consensus size: 38

         61 TAAAATTACC

                                                  
         71 AAAAATTCAAAGTAATAAGTAAGAATGTAAGATTGTTG
          1 AAAAATTCAAAGTAATAAGTAAGAATGTAAGATTGTTG

                           *                       
        109 AAAAATGT-AAAGTATTAAGTAAGAATGTAAGATTGTTG
          1 AAAAAT-TCAAAGTAATAAGTAAGAATGTAAGATTGTTG

              
        147 AA
          1 AA

        149 TTTGTTGAAA


Statistics
Matches: 38,  Mismatches: 1, Indels: 2
        0.93            0.02        0.05

Matches are distributed among these distances:
  38   37  0.97
  39    1  0.03

ACGTcount: A:0.50, C:0.01, G:0.19, T:0.29


Consensus pattern (38 bp):   
AAAAATTCAAAGTAATAAGTAAGAATGTAAGATTGTTG
Done.