Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003852.1 Corchorus capsularis cultivar CVL-1 contig03860, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 625

Length: 1043
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.28


Found at i:199 original size:33 final size:33

Alignment explanation


    Indices: 162--268  Score: 103
    Period size: 33  Copynumber: 3.2  Consensus size: 33

        152 CGCCAAGCGA

                                  *           
        162 TGGCCGGTTG-TGGCCGGACATGTCCATGTCGCG
          1 TGGCCGGTTGATGGCCGGACATCTCCA-GTCGCG

                              *               
        195 TGGCCGG-TGATGGCCGGGCATCTCCGAGTCGCG
          1 TGGCCGGTTGATGGCCGGACATCTCC-AGTCGCG

                   *  *       * *            *
        228 TGGCC-GATGTTGGCCGGTCTTCTCCAAGTCGCA
          1 TGGCCGGTTGATGGCCGGACATCTCC-AGTCGCG

                    
        261 TGGCCGGT
          1 TGGCCGGT

        269 CACTCGCACC


Statistics
Matches: 62,  Mismatches: 8, Indels: 7
        0.81            0.10        0.09

Matches are distributed among these distances:
  32    3  0.05
  33   57  0.92
  34    2  0.03

ACGTcount: A:0.09, C:0.29, G:0.38, T:0.23


Consensus pattern (33 bp):   
TGGCCGGTTGATGGCCGGACATCTCCAGTCGCG
Done.