Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003853.1 Corchorus capsularis cultivar CVL-1 contig03861, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 672

Length: 1121
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31


Found at i:859 original size:8 final size:8

Alignment explanation


    Indices: 846--873  Score: 56
    Period size: 8  Copynumber: 3.5  Consensus size: 8

        836 TAGAGATAAA

                    
        846 GGATGGAG
          1 GGATGGAG

                    
        854 GGATGGAG
          1 GGATGGAG

                    
        862 GGATGGAG
          1 GGATGGAG

                
        870 GGAT
          1 GGAT

        874 CCATCGGTTA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   20  1.00

ACGTcount: A:0.25, C:0.00, G:0.61, T:0.14


Consensus pattern (8 bp):   
GGATGGAG
Done.