Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003856.1 Corchorus capsularis cultivar CVL-1 contig03864, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6809
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29


Found at i:2538 original size:5 final size:5

Alignment explanation


    Indices: 2528--2566  Score: 69
    Period size: 5  Copynumber: 7.8  Consensus size: 5

       2518 TGAGGTTGAG

                                           *              
       2528 TCTTT TCTTT TCTTT TCTTT TCTTT TTTTT TCTTT TCTT
          1 TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT TCTT

       2567 GGTCAGAACC


Statistics
Matches: 32,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   5   32  1.00

ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82


Consensus pattern (5 bp):   
TCTTT

Found at i:5348 original size:31 final size:31

Alignment explanation


    Indices: 5290--5348  Score: 73
    Period size: 31  Copynumber: 1.9  Consensus size: 31

       5280 AGTTTTGAGA

                        ***    *           
       5290 AACTTTTGAAACGTTTATTTTACCCTTATTT
          1 AACTTTTGAAACACCTATTATACCCTTATTT

                                  *     
       5321 AACTTTTGAAACACCTATTATATCCTTA
          1 AACTTTTGAAACACCTATTATACCCTTA

       5349 GTTTTTTAAC


Statistics
Matches: 23,  Mismatches: 5, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  31   23  1.00

ACGTcount: A:0.31, C:0.19, G:0.05, T:0.46


Consensus pattern (31 bp):   
AACTTTTGAAACACCTATTATACCCTTATTT
Done.