Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003858.1 Corchorus capsularis cultivar CVL-1 contig03866, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 859

Length: 1432
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.35


Found at i:664 original size:21 final size:21

Alignment explanation


    Indices: 638--677  Score: 71
    Period size: 21  Copynumber: 1.9  Consensus size: 21

        628 CGGAAATCTA

                                 
        638 CTACTTCCTGTCGTACTTCCT
          1 CTACTTCCTGTCGTACTTCCT

                       *       
        659 CTACTTCCTGTGGTACTTC
          1 CTACTTCCTGTCGTACTTC

        678 TTCTCCATCA


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.10, C:0.35, G:0.12, T:0.42


Consensus pattern (21 bp):   
CTACTTCCTGTCGTACTTCCT
Done.