Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003862.1 Corchorus capsularis cultivar CVL-1 contig03870, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 715

Length: 1193
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.38


Found at i:1068 original size:24 final size:26

Alignment explanation


    Indices: 1014--1068  Score: 60
    Period size: 24  Copynumber: 2.2  Consensus size: 26

       1004 TTAGATTTAG

                                 **   
       1014 ATTTAATTTGCTTTGCTTTATTTTTA
          1 ATTTAATTTGCTTTGCTTTATAATTA

            *             *           
       1040 GTTTAA-TTG-TTTTCTTTATAATTA
          1 ATTTAATTTGCTTTGCTTTATAATTA

                 
       1064 ATTTA
          1 ATTTA

       1069 TCTAATCCCT


Statistics
Matches: 24,  Mismatches: 5, Indels: 2
        0.77            0.16        0.06

Matches are distributed among these distances:
  24   16  0.67
  25    3  0.12
  26    5  0.21

ACGTcount: A:0.24, C:0.05, G:0.07, T:0.64


Consensus pattern (26 bp):   
ATTTAATTTGCTTTGCTTTATAATTA
Done.