Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003873.1 Corchorus capsularis cultivar CVL-1 contig03881, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 640

Length: 1068
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.31


Found at i:515 original size:27 final size:27

Alignment explanation


    Indices: 440--518  Score: 122
    Period size: 27  Copynumber: 2.9  Consensus size: 27

        430 AGGTGAACTT

                     *            **    
        440 AAAAATGACTAAAATGCCCCCTAAGTGC
          1 AAAAATGACCAAAATG-CCCCTGGGTGC

                                       
        468 AAAAATGACCAAAATGCCCCTGGGTGC
          1 AAAAATGACCAAAATGCCCCTGGGTGC

                                    
        495 AAAAATGACCAAAATGCCCCTGGG
          1 AAAAATGACCAAAATGCCCCTGGG

        519 CGTCCCTAAT


Statistics
Matches: 48,  Mismatches: 3, Indels: 1
        0.92            0.06        0.02

Matches are distributed among these distances:
  27   33  0.69
  28   15  0.31

ACGTcount: A:0.41, C:0.25, G:0.19, T:0.15


Consensus pattern (27 bp):   
AAAAATGACCAAAATGCCCCTGGGTGC
Done.